Variant report

Variant	rs9475638
Chromosome Location	chr6:56089655-56089656
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10046394	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10223337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464347	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464361	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464363	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464364	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464365	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475573	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9475574	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475576	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9475579	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475582	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475585	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475588	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475590	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475592	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9475597	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475600	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475601	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475602	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475605	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475609	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475613	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475614	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475618	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475619	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9475625	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475629	0.96[AFR][1000 genomes]
rs9475630	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475635	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475636	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung
2	chr6:56082200-56104800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:56085000-56093600	Enhancers	NHDF-Ad	bronchial
4	chr6:56086200-56092600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:56086600-56093200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:56087000-56090400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:56087200-56090200	Enhancers	Colon Smooth Muscle	Colon
8	chr6:56087200-56090400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:56087400-56092400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:56087600-56089800	Enhancers	Osteobl	bone
11	chr6:56087600-56091000	Enhancers	Rectal Smooth Muscle	rectum
12	chr6:56087800-56093200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:56088800-56090800	Enhancers	HSMM	muscle
14	chr6:56089000-56091600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:56089200-56091000	Enhancers	A549	lung
16	chr6:56089200-56092200	Weak transcription	Fetal Kidney	kidney
17	chr6:56089200-56092600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:56089200-56095800	Weak transcription	HMEC	breast
19	chr6:56089200-56097600	Weak transcription	Aorta	Aorta
20	chr6:56089400-56095600	Weak transcription	NHEK	skin
21	chr6:56089400-56096000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:56089600-56091200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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