Variant report

Variant	rs9475645
Chromosome Location	chr6:56124148-56124149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56123260..56125074-chr6:56128242..56130559,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12110798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1925140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2397211	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2894834	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60407790	0.95[ASN][1000 genomes]
rs62411896	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459141	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902532	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904902	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6905216	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919257	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6920090	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931235	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6931381	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7753541	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757732	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760380	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296837	0.82[CHB][hapmap];0.84[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464370	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9475647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475649	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56120800-56129800	Weak transcription	Aorta	Aorta
2	chr6:56122200-56124400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:56123000-56124800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:56123000-56125200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:56123000-56125200	Enhancers	Fetal Muscle Leg	muscle
6	chr6:56123200-56125000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:56123200-56125200	Enhancers	Fetal Lung	lung
8	chr6:56123200-56125200	Enhancers	HSMMtube	muscle
9	chr6:56123400-56124400	Weak transcription	Osteobl	bone
10	chr6:56123400-56124600	Weak transcription	NHLF	lung
11	chr6:56123400-56124800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:56123600-56124600	Enhancers	Fetal Brain Male	brain
13	chr6:56123800-56124200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:56123800-56124600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:56123800-56124800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:56123800-56125000	Enhancers	HSMM	muscle
17	chr6:56123800-56126200	Enhancers	Fetal Stomach	stomach
18	chr6:56124000-56124200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:56124000-56124400	Weak transcription	Fetal Kidney	kidney
20	chr6:56124000-56124800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:56124000-56124800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:56124000-56125000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:56124000-56125000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:56124000-56125000	Enhancers	Fetal Brain Female	brain

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