Variant report

Variant	rs9475664
Chromosome Location	chr6:56182197-56182198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56180827..56183600-chr6:56183736..56185920,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10456731	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs10948995	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2397218	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs4629685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs6459153	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6901838	0.93[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6907967	0.84[AFR][1000 genomes]
rs6911570	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6912074	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6921043	0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs6924804	0.93[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6926105	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6932738	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9357911	0.85[AFR][1000 genomes]
rs9370522	0.86[AFR][1000 genomes]
rs9396204	0.91[GIH][hapmap]
rs9475663	0.84[MKK][hapmap]
rs9475665	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs9475666	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9475669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9475671	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap]
rs9475674	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9475664	BMP5	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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