Variant report

Variant	rs9475665
Chromosome Location	chr6:56182465-56182466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56180827..56183600-chr6:56183736..56185920,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10456731	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs10948995	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2397218	0.95[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap]
rs4629685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6459151	0.84[AMR][1000 genomes]
rs6459152	0.81[AMR][1000 genomes]
rs6459153	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes]
rs6901838	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6907967	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6911570	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6912074	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6921043	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs6924804	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6926105	0.95[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap]
rs6932738	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9357911	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9370522	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9475663	0.84[CEU][hapmap];0.85[MKK][hapmap]
rs9475664	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs9475666	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9475669	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9475671	0.94[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];0.80[YRI][hapmap]
rs9475674	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv823703	chr6:56182448-56189664	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9475665	FBXO9	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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