Variant report
| Variant | rs9475666 |
|---|---|
| Chromosome Location | chr6:56182503-56182504 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:56180827..56183600-chr6:56183736..56185920,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10456731 | 1.00[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs10948995 | 0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2397218 | 0.86[CHB][hapmap];0.92[JPT][hapmap] |
| rs4629685 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6459151 | 0.84[AMR][1000 genomes] |
| rs6459152 | 0.81[AMR][1000 genomes] |
| rs6459153 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs6901838 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6907967 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6911570 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs6912074 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs6921043 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs6924804 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs6926105 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs6932738 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs9357911 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs9370522 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs9475664 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs9475665 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs9475669 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs9475671 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap] |
| rs9475674 | 0.92[AFR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491933 | chr6:56177722-57171010 | Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv823703 | chr6:56182448-56189664 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
