Variant report
| Variant | rs9475671 |
|---|---|
| Chromosome Location | chr6:56186443-56186444 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:56178358..56181884-chr6:56184796..56186667,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10456731 | 1.00[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs10948995 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2397218 | 0.85[CHB][hapmap];0.92[JPT][hapmap] |
| rs4629685 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6459153 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs6901838 | 0.87[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.80[YRI][hapmap] |
| rs6911570 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs6912074 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs6921043 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs6924804 | 0.87[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.90[MKK][hapmap];0.80[YRI][hapmap] |
| rs6926105 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs6932738 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs9396204 | 0.91[GIH][hapmap] |
| rs9475663 | 0.84[MKK][hapmap] |
| rs9475664 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap] |
| rs9475665 | 0.94[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];0.80[YRI][hapmap] |
| rs9475666 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap] |
| rs9475669 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs9475674 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491933 | chr6:56177722-57171010 | Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv823703 | chr6:56182448-56189664 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
