Variant report

Variant	rs9478557
Chromosome Location	chr6:150515432-150515433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10457859	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12191405	0.95[EUR][1000 genomes]
rs12201610	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12211097	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12211587	0.90[EUR][1000 genomes]
rs59114788	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6907224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs746984	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9479904	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9479919	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150506600-150515600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:150508400-150517000	Weak transcription	K562	blood
4	chr6:150510600-150518000	Weak transcription	Psoas Muscle	Psoas
5	chr6:150513600-150517200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:150513800-150516800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150513800-150517000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:150513800-150517000	Weak transcription	NHEK	skin
9	chr6:150514000-150517000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:150514000-150517000	Weak transcription	HMEC	breast
11	chr6:150514200-150515600	Enhancers	Fetal Heart	heart
12	chr6:150514200-150517000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:150514800-150517000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:150514800-150524000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:150515000-150517000	Weak transcription	Right Ventricle	heart
16	chr6:150515000-150517800	Weak transcription	Fetal Brain Female	brain
17	chr6:150515200-150516400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:150515200-150518200	Weak transcription	Right Atrium	heart
19	chr6:150515400-150519600	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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