Variant report

Variant	rs9478581
Chromosome Location	chr6:150532000-150532001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150527436..150531235-chr6:150531369..150534733,5	K562	blood:
2	chr6:150463574..150465134-chr6:150531593..150533755,2	K562	blood:
3	chr6:150531888..150534706-chr6:150587953..150589817,2	K562	blood:

Variant related genes	Relation type
ENSG00000198729	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10080687	0.96[AFR][1000 genomes]
rs9478580	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3321568	chr6:150528559-150532857	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150524000-150532400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:150525400-150533400	Weak transcription	Right Atrium	heart
3	chr6:150526600-150532400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:150526600-150541800	Weak transcription	Fetal Intestine Small	intestine
5	chr6:150529600-150536000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:150529800-150532600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:150530000-150532000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:150530000-150532600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:150530000-150533800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:150530200-150541600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:150530400-150532200	Weak transcription	Left Ventricle	heart
12	chr6:150530400-150533000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:150530600-150532800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:150530600-150535200	Enhancers	K562	blood
15	chr6:150530800-150532200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:150530800-150532200	Weak transcription	NHEK	skin
17	chr6:150530800-150533000	Weak transcription	Fetal Brain Female	brain
18	chr6:150530800-150533000	Weak transcription	HMEC	breast
19	chr6:150531000-150532000	Weak transcription	Right Ventricle	heart
20	chr6:150531000-150533800	Enhancers	Fetal Heart	heart
21	chr6:150531000-150541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:150531200-150533000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:150531200-150533400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:150531400-150532400	Weak transcription	Fetal Brain Male	brain
25	chr6:150531400-150533600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:150531400-150535000	Weak transcription	Spleen	Spleen
27	chr6:150531800-150532800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:150532000-150532800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:150532000-150534800	Enhancers	Right Ventricle	heart

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