Variant report

Variant	rs9478774
Chromosome Location	chr6:150956246-150956247
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150951151..150953690-chr6:150954298..150957054,3	K562	blood:
2	chr6:150951658..150953857-chr6:150954928..150957054,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11968779	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs1352975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345668	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2345669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs275348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323318	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4400227	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4530869	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4869921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4869922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4869924	1.00[JPT][hapmap]
rs4869932	1.00[JPT][hapmap];0.87[AFR][1000 genomes]
rs4870533	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4870534	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs4870535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs4870537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62432653	0.80[EUR][1000 genomes]
rs62432656	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62432657	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62432658	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62432659	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62434060	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62434061	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62434062	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62434064	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62434092	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434093	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434094	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434095	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434096	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434097	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434098	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434099	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434100	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434101	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434102	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434103	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434104	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73002187	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73002188	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73002195	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73004311	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73016045	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73016054	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9478767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9478768	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9478769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9478770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9478771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9478772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478777	1.00[JPT][hapmap]
rs9478786	0.87[AFR][1000 genomes]
rs9480490	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9480492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9480493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9480494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9480495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9480496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9480497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9480499	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9480503	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9480505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480511	1.00[JPT][hapmap]
rs9480516	1.00[JPT][hapmap]
rs9480517	1.00[JPT][hapmap]
rs9480518	1.00[JPT][hapmap]
rs9480521	1.00[JPT][hapmap]
rs9480522	1.00[JPT][hapmap]
rs9480540	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150941800-150962600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:150947600-150957400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150947800-150959400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150949000-150958000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:150953200-150957800	Enhancers	Fetal Kidney	kidney
6	chr6:150953600-150956400	Flanking Active TSS	Primary B cells from peripheral blood	blood
7	chr6:150953800-150956600	Weak transcription	Stomach Mucosa	stomach
8	chr6:150953800-150962200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:150953800-150962400	Weak transcription	Ovary	ovary
10	chr6:150954000-150961800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:150954200-150956400	Weak transcription	Brain Germinal Matrix	brain
12	chr6:150954400-150957600	Enhancers	Fetal Heart	heart
13	chr6:150954400-150958800	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr6:150954600-150958000	Weak transcription	Brain Substantia Nigra	brain
15	chr6:150954600-150962600	Weak transcription	Adipose Nuclei	Adipose
16	chr6:150954600-150962600	Weak transcription	Brain Anterior Caudate	brain
17	chr6:150954800-150961800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:150955000-150956400	Weak transcription	Liver	Liver
19	chr6:150955000-150956400	Enhancers	Fetal Thymus	thymus
20	chr6:150955000-150956600	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:150955000-150956800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:150955000-150960800	Weak transcription	Lung	lung
23	chr6:150955000-150962400	Weak transcription	Right Atrium	heart
24	chr6:150955200-150956400	Enhancers	Thymus	Thymus
25	chr6:150955200-150957400	Weak transcription	Left Ventricle	heart
26	chr6:150955200-150958600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:150955200-150959400	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:150955200-150959400	Weak transcription	Gastric	stomach
29	chr6:150955200-150961000	Weak transcription	Spleen	Spleen
30	chr6:150955200-150963400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:150955400-150956400	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr6:150955400-150956400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:150955400-150957600	Flanking Active TSS	GM12878-XiMat	blood
34	chr6:150955600-150956400	Enhancers	HMEC	breast
35	chr6:150955600-150956400	Enhancers	NH-A	brain
36	chr6:150955600-150957400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:150955600-150963600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:150955800-150956400	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr6:150955800-150956400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:150955800-150972400	Weak transcription	Fetal Stomach	stomach
41	chr6:150956000-150956400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:150956000-150956400	Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr6:150956000-150956800	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr6:150956000-150956800	Enhancers	Fetal Lung	lung
45	chr6:150956000-150961400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:150956200-150956400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:150956200-150956400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:150956200-150956600	Weak transcription	Small Intestine	intestine
49	chr6:150956200-150958200	Enhancers	Duodenum Mucosa	Duodenum
50	chr6:150956200-150958200	Enhancers	Fetal Intestine Large	intestine

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