Variant report

Variant	rs9478778
Chromosome Location	chr6:150994394-150994395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150993621..150995744-chr6:151052109..151054266,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10085221	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182140	1.00[ASN][1000 genomes]
rs1964631	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869924	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4869925	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73004397	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73006338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73006339	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73008164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73008165	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73008166	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73008169	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478776	0.89[AMR][1000 genomes]
rs9478777	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480511	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9480512	0.97[AMR][1000 genomes]
rs9480513	1.00[AMR][1000 genomes]
rs9480515	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480516	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480517	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480518	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480520	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480521	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480522	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480523	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480524	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150975600-151002800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:150980600-151008800	Weak transcription	Gastric	stomach
3	chr6:150980800-151014800	Weak transcription	Pancreas	Pancrea
4	chr6:150987600-150994800	Weak transcription	Lung	lung
5	chr6:150987600-151002800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:150987800-150994400	Weak transcription	Esophagus	oesophagus
7	chr6:150987800-151001400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:150988000-150994400	Weak transcription	Placenta	Placenta
9	chr6:150989400-151007800	Weak transcription	Ovary	ovary
10	chr6:150990400-150995400	Weak transcription	Stomach Mucosa	stomach
11	chr6:150990400-151003200	Weak transcription	Left Ventricle	heart
12	chr6:150990600-150994400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:150990600-150994400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:150990600-150994600	Weak transcription	Fetal Brain Male	brain
15	chr6:150990600-151002800	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:150990600-151008800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:150990600-151016600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:150990800-150994400	Weak transcription	Fetal Intestine Small	intestine
19	chr6:150990800-150997800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:150990800-150998000	Weak transcription	Fetal Stomach	stomach
21	chr6:150990800-151003200	Weak transcription	Adipose Nuclei	Adipose
22	chr6:150990800-151011800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:150991600-150994400	Strong transcription	Primary B cells from peripheral blood	blood
24	chr6:150991800-150994400	Weak transcription	Spleen	Spleen
25	chr6:150992600-150995800	Enhancers	Thymus	Thymus
26	chr6:150993000-150994400	Weak transcription	Primary B cells from cord blood	blood
27	chr6:150993400-150995800	Enhancers	Liver	Liver
28	chr6:150993600-150995200	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr6:150993800-150995600	Enhancers	Fetal Lung	lung
30	chr6:150994000-150994600	Enhancers	Brain Angular Gyrus	brain
31	chr6:150994000-150994600	Enhancers	Colon Smooth Muscle	Colon
32	chr6:150994000-150994800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:150994000-150994800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr6:150994000-150995400	Enhancers	Small Intestine	intestine
35	chr6:150994200-150995000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr6:150994200-150995000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr6:150994200-150995200	Bivalent Enhancer	Fetal Intestine Large	intestine
38	chr6:150994200-150995200	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr6:150994200-150995600	Enhancers	Duodenum Mucosa	Duodenum
40	chr6:150994200-150995800	Enhancers	Fetal Kidney	kidney
41	chr6:150994200-150996600	Genic enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links