Variant report

Variant	rs9478787
Chromosome Location	chr6:151026886-151026887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17080212	1.00[JPT][hapmap]
rs17080238	0.85[JPT][hapmap]
rs1968999	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2279628	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4869689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869932	0.88[EUR][1000 genomes]
rs7748886	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7772795	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9478790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9478791	0.82[AMR][1000 genomes]
rs9480534	0.88[EUR][1000 genomes]
rs9480535	0.88[EUR][1000 genomes]
rs9480536	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151015200-151033200	Weak transcription	Right Atrium	heart
2	chr6:151017600-151029200	Weak transcription	Lung	lung
3	chr6:151017800-151027200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:151018800-151028600	Weak transcription	Adipose Nuclei	Adipose
5	chr6:151019000-151033000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:151019000-151033200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:151019000-151035200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:151021400-151029000	Weak transcription	Left Ventricle	heart
9	chr6:151021600-151033000	Weak transcription	Fetal Stomach	stomach
10	chr6:151021600-151040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:151024000-151027600	Enhancers	Placenta	Placenta
12	chr6:151024200-151028600	Weak transcription	Small Intestine	intestine
13	chr6:151024200-151034200	Weak transcription	Right Ventricle	heart
14	chr6:151024400-151028800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:151024400-151032800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:151024800-151027000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:151025400-151027800	Enhancers	Thymus	Thymus
18	chr6:151025400-151029000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:151025400-151029000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:151025600-151027600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:151025600-151028000	Enhancers	Fetal Thymus	thymus
22	chr6:151025600-151033200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:151025800-151031400	Weak transcription	Esophagus	oesophagus
24	chr6:151026000-151028600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:151026000-151029000	Weak transcription	Brain Anterior Caudate	brain
26	chr6:151026000-151030800	Weak transcription	Stomach Mucosa	stomach
27	chr6:151026000-151033600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:151026200-151027400	Enhancers	Fetal Kidney	kidney
29	chr6:151026200-151031200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:151026400-151031000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr6:151026600-151027000	Enhancers	Primary B cells from cord blood	blood
32	chr6:151026600-151027200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr6:151026800-151027000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:151026800-151027000	Enhancers	Fetal Intestine Small	intestine
35	chr6:151026800-151027000	Enhancers	Fetal Lung	lung
36	chr6:151026800-151027400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr6:151026800-151028600	Weak transcription	Spleen	Spleen
38	chr6:151026800-151029000	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:151026800-151033200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:151026800-151043600	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links