Variant report

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1033446	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11752980	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11754755	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35512316	0.84[AMR][1000 genomes]
rs4594964	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60000576	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs67032163	0.86[AMR][1000 genomes]
rs6904218	0.91[MEX][hapmap]
rs7753910	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371450	0.80[ASN][1000 genomes]
rs9372050	0.94[ASN][1000 genomes]
rs9383824	0.92[ASN][1000 genomes]
rs9383825	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9384535	0.88[ASN][1000 genomes]
rs9480453	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9480461	LRP11	cis	cerebellum	SCAN
rs9480461	LATS1	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150799400-150800400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:150799400-150800600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:150799400-150800600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:150799600-150800200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:150799600-150800400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:150799600-150800400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:150799600-150800400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:150799600-150800400	Enhancers	Adipose Nuclei	Adipose
9	chr6:150799600-150800600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:150799600-150800800	Enhancers	Fetal Lung	lung
11	chr6:150799800-150800200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr6:150799800-150800200	Enhancers	Ovary	ovary
13	chr6:150799800-150800400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:150799800-150800400	Enhancers	Fetal Heart	heart
15	chr6:150799800-150800600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:150799800-150800600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:150799800-150800600	Enhancers	Fetal Muscle Leg	muscle
18	chr6:150799800-150800600	Enhancers	Fetal Thymus	thymus
19	chr6:150799800-150800800	Enhancers	Fetal Kidney	kidney
20	chr6:150799800-150800800	Enhancers	Fetal Stomach	stomach

Quick Search: