Variant report
| Variant | rs9480468 |
|---|---|
| Chromosome Location | chr6:150819438-150819439 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:150812964..150816383-chr6:150817541..150822095,5 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs4282419 | 0.84[ASN][1000 genomes] |
| rs4304173 | 0.85[ASN][1000 genomes] |
| rs4317421 | 0.84[ASN][1000 genomes] |
| rs4367393 | 0.80[ASN][1000 genomes] |
| rs4478418 | 0.80[ASN][1000 genomes] |
| rs4555931 | 0.84[ASN][1000 genomes] |
| rs6903974 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6908890 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs6925854 | 0.81[ASN][1000 genomes] |
| rs7764084 | 0.94[JPT][hapmap] |
| rs9372055 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9384546 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9384551 | 0.82[ASN][1000 genomes] |
| rs9384557 | 0.80[CHB][hapmap];0.88[JPT][hapmap] |
| rs9397322 | 0.80[ASN][1000 genomes] |
| rs9397330 | 0.82[ASN][1000 genomes] |
| rs9398010 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9480466 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9480467 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020067 | chr6:150730783-150870708 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv886772 | chr6:150743364-151024280 | Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:150817400-150820800 | Weak transcription | Small Intestine | intestine |
