Variant report

Variant	rs9480500
Chromosome Location	chr6:150947411-150947412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58578147	1.00[AMR][1000 genomes]
rs6901976	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs73606254	0.82[ASN][1000 genomes]
rs73606255	0.82[ASN][1000 genomes]
rs9478766	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs9480507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150928400-150952800	Weak transcription	Right Ventricle	heart
2	chr6:150928600-150948800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:150939000-150949600	Weak transcription	Pancreas	Pancrea
4	chr6:150939000-150954200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:150939800-150948600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:150940800-150948600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:150941200-150953000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:150941800-150954000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:150941800-150962600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:150942000-150949600	Weak transcription	Colonic Mucosa	Colon
11	chr6:150942000-150949600	Weak transcription	Gastric	stomach
12	chr6:150942200-150948800	Weak transcription	Stomach Mucosa	stomach
13	chr6:150942400-150948000	Weak transcription	Small Intestine	intestine
14	chr6:150942600-150948000	Weak transcription	Fetal Intestine Small	intestine
15	chr6:150944600-150948000	Weak transcription	Liver	Liver
16	chr6:150944800-150948200	Genic enhancers	Fetal Thymus	thymus
17	chr6:150945000-150947600	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:150945000-150948000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:150945000-150948000	Weak transcription	HUVEC	blood vessel
20	chr6:150945000-150950000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:150945000-150954200	Weak transcription	Aorta	Aorta
22	chr6:150945200-150947600	Weak transcription	Adipose Nuclei	Adipose
23	chr6:150945200-150947600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:150945400-150947600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:150945400-150947600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:150945600-150948000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:150945600-150950000	Weak transcription	Lung	lung
28	chr6:150945800-150948400	Enhancers	Primary B cells from cord blood	blood
29	chr6:150945800-150948400	Weak transcription	Primary T cells from cord blood	blood
30	chr6:150946400-150948200	Genic enhancers	Primary B cells from peripheral blood	blood
31	chr6:150947000-150947600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:150947200-150948000	Enhancers	Spleen	Spleen
33	chr6:150947200-150948200	Genic enhancers	Thymus	Thymus
34	chr6:150947200-150953400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:150947400-150947800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:150947400-150947800	Enhancers	Placenta	Placenta
37	chr6:150947400-150947800	Enhancers	Left Ventricle	heart
38	chr6:150947400-150948000	Enhancers	Right Atrium	heart
39	chr6:150947400-150948400	Weak transcription	Fetal Brain Female	brain
40	chr6:150947400-150949600	Enhancers	Primary hematopoietic stem cells	blood
41	chr6:150947400-150950400	Enhancers	Fetal Intestine Large	intestine
42	chr6:150947400-150950400	Enhancers	Fetal Kidney	kidney
43	chr6:150947400-150950400	Enhancers	Fetal Lung	lung
44	chr6:150947400-150950400	Enhancers	Fetal Stomach	stomach
45	chr6:150947400-150950400	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr6:150947400-150950400	Enhancers	Sigmoid Colon	Sigmoid Colon

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