Variant report

Variant	rs9480513
Chromosome Location	chr6:150988046-150988047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150982869..150985340-chr6:150985871..150988445,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10085221	0.91[AMR][1000 genomes]
rs1964631	0.97[AMR][1000 genomes]
rs4869924	0.88[AMR][1000 genomes]
rs4869925	0.94[AMR][1000 genomes]
rs73004397	0.88[AMR][1000 genomes]
rs73006338	1.00[AMR][1000 genomes]
rs73006339	0.97[AMR][1000 genomes]
rs73008164	1.00[AMR][1000 genomes]
rs73008165	0.97[AMR][1000 genomes]
rs73008166	0.97[AMR][1000 genomes]
rs73008169	0.97[AMR][1000 genomes]
rs9478776	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9478777	0.91[AMR][1000 genomes]
rs9478778	1.00[AMR][1000 genomes]
rs9480511	0.91[AMR][1000 genomes]
rs9480512	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480515	0.94[AMR][1000 genomes]
rs9480516	0.97[AMR][1000 genomes]
rs9480517	0.97[AMR][1000 genomes]
rs9480518	0.97[AMR][1000 genomes]
rs9480520	0.97[AMR][1000 genomes]
rs9480521	0.97[AMR][1000 genomes]
rs9480522	0.97[AMR][1000 genomes]
rs9480523	0.97[AMR][1000 genomes]
rs9480524	0.97[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150974800-150988600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:150975600-151002800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:150975800-150988400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:150976000-150988600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150977800-150988800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:150977800-150989200	Weak transcription	HUVEC	blood vessel
7	chr6:150980600-150988400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:150980600-150988800	Weak transcription	Fetal Brain Female	brain
9	chr6:150980600-151008800	Weak transcription	Gastric	stomach
10	chr6:150980800-150989000	Weak transcription	Small Intestine	intestine
11	chr6:150980800-150989600	Weak transcription	Brain Anterior Caudate	brain
12	chr6:150980800-150989600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:150980800-151014800	Weak transcription	Pancreas	Pancrea
14	chr6:150981000-150988800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150981000-150989400	Weak transcription	Liver	Liver
16	chr6:150981200-150988400	Weak transcription	Fetal Heart	heart
17	chr6:150981200-150988800	Weak transcription	HMEC	breast
18	chr6:150981200-150989200	Weak transcription	Fetal Intestine Large	intestine
19	chr6:150986000-150988600	Weak transcription	Fetal Intestine Small	intestine
20	chr6:150986000-150990800	Enhancers	Fetal Stomach	stomach
21	chr6:150986200-150989000	Weak transcription	Brain Germinal Matrix	brain
22	chr6:150986800-150988200	Enhancers	Fetal Thymus	thymus
23	chr6:150987200-150988800	Weak transcription	Stomach Mucosa	stomach
24	chr6:150987200-150989000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr6:150987400-150988400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:150987400-150989000	Weak transcription	Ovary	ovary
27	chr6:150987400-150989400	Strong transcription	Primary B cells from cord blood	blood
28	chr6:150987600-150988400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:150987600-150988600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:150987600-150989000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:150987600-150989200	Weak transcription	Aorta	Aorta
32	chr6:150987600-150990600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:150987600-150990600	Enhancers	Fetal Kidney	kidney
34	chr6:150987600-150994800	Weak transcription	Lung	lung
35	chr6:150987600-151002800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:150987800-150988200	Weak transcription	Adipose Nuclei	Adipose
37	chr6:150987800-150988200	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:150987800-150988200	Weak transcription	Colon Smooth Muscle	Colon
39	chr6:150987800-150988600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:150987800-150988800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr6:150987800-150988800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:150987800-150988800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:150987800-150989000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr6:150987800-150989000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:150987800-150989000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:150987800-150989000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:150987800-150989200	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:150987800-150989200	Weak transcription	Left Ventricle	heart
49	chr6:150987800-150989200	Weak transcription	Thymus	Thymus
50	chr6:150987800-150989600	Weak transcription	Brain Angular Gyrus	brain

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