Variant report

Variant	rs9480535
Chromosome Location	chr6:151018645-151018646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs4869689	0.89[EUR][1000 genomes]
rs4869932	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4869934	0.85[EUR][1000 genomes]
rs4869935	0.85[EUR][1000 genomes]
rs4869936	0.85[EUR][1000 genomes]
rs4869938	0.85[EUR][1000 genomes]
rs4869939	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5029652	0.85[EUR][1000 genomes]
rs6902743	0.85[EUR][1000 genomes]
rs9478784	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9478786	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9478787	0.88[EUR][1000 genomes]
rs9480534	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9480536	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480540	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9480548	0.85[EUR][1000 genomes]
rs9480549	0.85[EUR][1000 genomes]
rs9480550	0.85[EUR][1000 genomes]
rs9480551	0.83[EUR][1000 genomes]
rs9986516	0.85[EUR][1000 genomes]
rs9986520	0.85[EUR][1000 genomes]
rs9986597	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151009000-151021200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:151012200-151023800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:151013000-151020600	Enhancers	Primary B cells from cord blood	blood
4	chr6:151014600-151021000	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:151015000-151020600	Weak transcription	Left Ventricle	heart
6	chr6:151015200-151033200	Weak transcription	Right Atrium	heart
7	chr6:151015400-151018800	Weak transcription	GM12878-XiMat	blood
8	chr6:151015400-151025600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:151016800-151019400	Enhancers	Brain Substantia Nigra	brain
10	chr6:151017000-151018800	Enhancers	Adipose Nuclei	Adipose
11	chr6:151017200-151018800	Enhancers	Fetal Muscle Leg	muscle
12	chr6:151017200-151019000	Enhancers	Fetal Stomach	stomach
13	chr6:151017400-151019000	Genic enhancers	Thymus	Thymus
14	chr6:151017400-151020600	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:151017600-151018800	Strong transcription	Fetal Thymus	thymus
16	chr6:151017600-151023800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:151017600-151029200	Weak transcription	Lung	lung
18	chr6:151017800-151025200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:151017800-151025600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:151017800-151027200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:151018200-151019000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:151018200-151019000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:151018200-151019000	Enhancers	Spleen	Spleen
24	chr6:151018200-151019200	Enhancers	Small Intestine	intestine
25	chr6:151018200-151019600	Enhancers	Liver	Liver
26	chr6:151018400-151018800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:151018400-151018800	Enhancers	Placenta	Placenta
28	chr6:151018400-151019000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:151018400-151019000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:151018400-151019000	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr6:151018400-151019000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:151018400-151019000	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr6:151018400-151019000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:151018400-151019200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:151018600-151018800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr6:151018600-151019000	Enhancers	Ovary	ovary
37	chr6:151018600-151021200	Weak transcription	Brain Cingulate Gyrus	brain

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