Variant report

Variant	rs9483485
Chromosome Location	chr6:132934107-132934108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:132933790-132934248	HepG2	liver:	n/a	n/a
2	CHD2	chr6:132933957-132934139	HepG2	liver:	n/a	n/a
3	CEBPB	chr6:132933905-132934251	HepG2	liver:	n/a	n/a
4	NR2F2	chr6:132933866-132934324	HepG2	liver:	n/a	n/a
5	NR2F2	chr6:132933901-132934345	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TAAR3	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3813350	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7769453	1.00[CEU][hapmap]
rs9321355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321356	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs9483487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132928000-132935200	Enhancers	Fetal Intestine Small	intestine
2	chr6:132930400-132935600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:132930800-132936200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:132931600-132937000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:132932000-132935600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:132932000-132937200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:132932600-132934800	Enhancers	Fetal Intestine Large	intestine
8	chr6:132933400-132936400	Active TSS	Duodenum Mucosa	Duodenum
9	chr6:132933600-132934200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr6:132933600-132934400	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr6:132933600-132934400	Enhancers	HepG2	liver
12	chr6:132933600-132934800	Flanking Active TSS	Liver	Liver
13	chr6:132933600-132935200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:132933600-132935600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:132933800-132934200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:132933800-132934200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:132933800-132935000	Enhancers	Brain Angular Gyrus	brain
18	chr6:132934000-132934200	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr6:132934000-132934200	Enhancers	Brain Substantia Nigra	brain
20	chr6:132934000-132934400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:132934000-132934400	Enhancers	Brain Cingulate Gyrus	brain
22	chr6:132934000-132935000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:132934000-132935000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr6:132934000-132935800	Weak transcription	Brain Anterior Caudate	brain

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