Variant report

Variant	rs9483524
Chromosome Location	chr6:133373585-133373586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133371252..133373949-chr6:133374893..133377251,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1114622	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1459239	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs271166	0.89[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap]
rs271167	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs271168	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs271171	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs271172	0.84[EUR][1000 genomes]
rs2926345	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2926350	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2926351	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3012464	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3012472	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3012473	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3012474	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4077768	0.89[AFR][1000 genomes]
rs4285336	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4571580	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640903	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62430562	0.85[AFR][1000 genomes]
rs6569865	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740210	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740263	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321388	0.87[AFR][1000 genomes]
rs9321389	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv5481	chr6:133311665-133374548	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3445931	chr6:133347824-133434532	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133361200-133376200	Weak transcription	Psoas Muscle	Psoas
2	chr6:133361800-133376000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:133368600-133376200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:133371400-133375800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:133371400-133376000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:133371400-133376000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:133371400-133376000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:133371400-133376200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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