Variant report

Variant	rs9483528
Chromosome Location	chr6:133420424-133420425
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133418545..133420592-chr6:133429051..133431256,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4476848	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7741494	1.00[MEX][hapmap]
rs7758119	1.00[EUR][1000 genomes]
rs9483531	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483533	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483534	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493506	1.00[TSI][hapmap]
rs9493507	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap]
rs9493508	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3445931	chr6:133347824-133434532	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133416200-133420800	Weak transcription	Brain Anterior Caudate	brain
2	chr6:133417200-133422200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:133417200-133422600	Weak transcription	Brain Substantia Nigra	brain
4	chr6:133418600-133421000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:133418800-133422800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:133419400-133421000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:133419400-133422800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:133419400-133422800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:133420000-133421000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:133420000-133421200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:133420000-133421200	Enhancers	HepG2	liver
12	chr6:133420000-133421400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:133420000-133421400	Enhancers	Hela-S3	cervix
14	chr6:133420000-133423200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:133420200-133420600	Enhancers	A549	lung
16	chr6:133420200-133421400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:133420200-133421400	Enhancers	NH-A	brain
18	chr6:133420200-133421400	Enhancers	NHLF	lung
19	chr6:133420200-133421600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:133420200-133421800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:133420400-133421000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:133420400-133421200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:133420400-133421200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:133420400-133421400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:133420400-133421400	Enhancers	HMEC	breast
26	chr6:133420400-133421400	Enhancers	NHEK	skin

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