Variant report

Variant	rs9485269
Chromosome Location	chr6:101102685-101102686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10223724	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13191491	1.00[AMR][1000 genomes]
rs6903356	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6910914	1.00[AMR][1000 genomes]
rs6911786	0.87[AFR][1000 genomes]
rs6912723	0.81[AFR][1000 genomes]
rs6913463	0.81[AFR][1000 genomes]
rs6923676	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938152	0.81[AFR][1000 genomes]
rs7740120	0.84[AFR][1000 genomes]
rs7743831	1.00[AMR][1000 genomes]
rs7748587	0.81[AFR][1000 genomes]
rs7752639	0.81[AFR][1000 genomes]
rs7756451	1.00[AMR][1000 genomes]
rs7762637	1.00[AMR][1000 genomes]
rs7766396	0.81[AFR][1000 genomes]
rs7771094	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9485367	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9485413	1.00[AMR][1000 genomes]
rs9498196	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498297	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498298	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498303	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498343	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498345	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498370	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498395	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498400	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886448	chr6:101018032-101123503	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886449	chr6:101018032-101147095	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886450	chr6:101018032-101168137	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886451	chr6:101018032-101172328	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886452	chr6:101018032-101192051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886453	chr6:101018032-101203051	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv463988	chr6:101036713-101158950	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv604266	chr6:101036713-101158950	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886454	chr6:101049108-101123503	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv886455	chr6:101049108-101203051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv886456	chr6:101049108-101277926	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv463990	chr6:101058886-101123503	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv604269	chr6:101058886-101123503	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv604270	chr6:101058886-101196080	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv604271	chr6:101072307-101158950	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv463991	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv604272	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv463992	chr6:101072307-101197953	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv604273	chr6:101072307-101197953	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv604274	chr6:101078718-101196080	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv1027288	chr6:101091434-101121237	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv1032826	chr6:101091434-101147095	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv1028583	chr6:101091434-101152631	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv1015465	chr6:101091434-101157493	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv1031817	chr6:101091995-101157493	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101032400-101104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:101032600-101110400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:101037400-101110600	Weak transcription	K562	blood
4	chr6:101037800-101107200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:101068400-101106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:101071600-101104600	Weak transcription	Brain Angular Gyrus	brain
7	chr6:101071600-101127800	Weak transcription	Hela-S3	cervix
8	chr6:101076400-101107200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:101076400-101110400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:101081200-101106000	Weak transcription	Fetal Brain Male	brain
11	chr6:101081600-101110800	Weak transcription	HSMMtube	muscle
12	chr6:101085800-101111000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:101086000-101104800	Weak transcription	Fetal Lung	lung
14	chr6:101086000-101105800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:101086800-101111000	Weak transcription	NHLF	lung
16	chr6:101087200-101110800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:101089200-101104200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:101089800-101104000	Strong transcription	Dnd41	blood
19	chr6:101091800-101105200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:101092800-101110200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:101093000-101107400	Weak transcription	Fetal Kidney	kidney
22	chr6:101093000-101110800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:101093000-101111600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:101093000-101112400	Weak transcription	Fetal Intestine Large	intestine
25	chr6:101093000-101145800	Weak transcription	Fetal Thymus	thymus
26	chr6:101094600-101108400	Weak transcription	GM12878-XiMat	blood
27	chr6:101094800-101105600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr6:101096800-101109200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:101098200-101104400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:101099000-101103800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:101099200-101103800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:101099400-101116600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:101100200-101118000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:101100400-101106000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:101100400-101108400	Weak transcription	HMEC	breast
36	chr6:101100400-101109200	Weak transcription	NHDF-Ad	bronchial
37	chr6:101100400-101111000	Weak transcription	HUVEC	blood vessel
38	chr6:101100400-101111200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr6:101100400-101131400	Weak transcription	Liver	Liver
40	chr6:101100600-101103000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr6:101100600-101111200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:101100600-101149800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:101100800-101102800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr6:101100800-101103000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:101100800-101103000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:101100800-101103000	Weak transcription	Brain Anterior Caudate	brain
47	chr6:101100800-101103400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr6:101100800-101104600	Weak transcription	Adipose Nuclei	Adipose
49	chr6:101100800-101106400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:101100800-101106600	Weak transcription	H1 Cell Line	embryonic stem cell

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