Variant report

Variant	rs9485542
Chromosome Location	chr6:102224286-102224287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11156157	0.90[ASN][1000 genomes]
rs1325060	0.87[ASN][1000 genomes]
rs1408767	0.84[ASN][1000 genomes]
rs1408768	0.81[ASN][1000 genomes]
rs17062480	0.95[ASN][1000 genomes]
rs2399636	0.82[ASN][1000 genomes]
rs2518191	0.84[ASN][1000 genomes]
rs2518206	0.84[ASN][1000 genomes]
rs2518267	0.84[ASN][1000 genomes]
rs2518268	0.84[ASN][1000 genomes]
rs2764225	0.84[ASN][1000 genomes]
rs4839802	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4840197	0.88[ASN][1000 genomes]
rs7749469	0.96[ASN][1000 genomes]
rs7754022	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7775085	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7775876	0.86[ASN][1000 genomes]
rs9322609	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9377308	0.85[ASN][1000 genomes]
rs9386291	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386293	0.83[ASN][1000 genomes]
rs9390784	0.88[ASN][1000 genomes]
rs9390785	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9399728	0.86[ASN][1000 genomes]
rs9399733	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9404143	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9404145	0.95[ASN][1000 genomes]
rs9498691	0.86[ASN][1000 genomes]
rs9498693	0.96[ASN][1000 genomes]
rs9498694	0.99[ASN][1000 genomes]
rs9498695	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9498696	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498697	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498698	0.95[ASN][1000 genomes]
rs9498701	0.83[ASN][1000 genomes]
rs9498702	0.83[ASN][1000 genomes]
rs9498703	0.91[ASN][1000 genomes]
rs9498713	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102214800-102224800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:102217600-102224600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:102218600-102224800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:102223000-102225200	Enhancers	Brain Germinal Matrix	brain
5	chr6:102224000-102225800	Enhancers	Brain Hippocampus Middle	brain

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