Variant report

Variant	rs9485578
Chromosome Location	chr6:102428342-102428343
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102427557..102429881-chr6:102433659..102436642,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs73763641	0.82[AFR][1000 genomes]
rs9322622	1.00[YRI][hapmap]
rs9485566	1.00[YRI][hapmap]
rs9485580	1.00[YRI][hapmap]
rs9485584	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9485590	1.00[YRI][hapmap]
rs9498759	1.00[YRI][hapmap]
rs9498779	1.00[YRI][hapmap]
rs9498790	1.00[YRI][hapmap]
rs9498791	1.00[YRI][hapmap]
rs9498793	1.00[YRI][hapmap]
rs9498802	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9498803	1.00[YRI][hapmap]
rs9498804	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9498813	1.00[YRI][hapmap]
rs9498815	1.00[YRI][hapmap]
rs9498816	1.00[YRI][hapmap]
rs9498822	1.00[YRI][hapmap]
rs9498823	1.00[YRI][hapmap]
rs9986426	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1033919	chr6:102417713-102474539	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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