Variant report

Variant	rs948850
Chromosome Location	chr11:56958270-56958271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56952647..56955298-chr11:56956349..56958322,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-P2RX3-4	chr11:56956461-56959187	NONHSAT021403

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10501363	0.87[ASN][1000 genomes]
rs10896573	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896574	0.86[ASN][1000 genomes]
rs10896575	0.90[ASN][1000 genomes]
rs10896593	0.84[EUR][1000 genomes]
rs11228936	0.87[ASN][1000 genomes]
rs11228937	0.88[ASN][1000 genomes]
rs11228955	0.87[EUR][1000 genomes]
rs1124847	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12225155	0.86[EUR][1000 genomes]
rs1941035	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1943486	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1943489	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1943491	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2077189	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2903267	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3017571	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3017574	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3017575	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3758922	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4939111	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72918002	0.87[ASN][1000 genomes]
rs948849	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56948200-56959200	Weak transcription	Gastric	stomach
2	chr11:56948400-56959400	Weak transcription	Right Atrium	heart
3	chr11:56949400-56962600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:56950200-56960400	Weak transcription	Right Ventricle	heart
5	chr11:56950200-56969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:56952600-56967000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:56953000-56958400	Strong transcription	Brain Germinal Matrix	brain
8	chr11:56953200-56958400	Weak transcription	Fetal Brain Male	brain
9	chr11:56954400-56958400	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:56955000-56959400	Weak transcription	Lung	lung
11	chr11:56955200-56958600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:56955200-56959200	Weak transcription	Fetal Stomach	stomach
13	chr11:56955800-56962600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:56956000-56958400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:56956000-56958600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:56958000-56958800	Weak transcription	Fetal Brain Female	brain

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