Variant report

Variant	rs9492069
Chromosome Location	chr6:129061701-129061702
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120729812..120732216-chr6:129058847..129061836,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200795	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1281243	1.00[CHB][hapmap]
rs1281244	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs1281247	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs1508448	1.00[ASN][1000 genomes]
rs1949003	1.00[ASN][1000 genomes]
rs28513684	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55986700	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60999252	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6569556	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72975313	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975393	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975394	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975400	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72977310	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs774281	1.00[ASN][1000 genomes]
rs774283	1.00[CHB][hapmap]
rs7746855	1.00[ASN][1000 genomes]
rs7753205	1.00[ASN][1000 genomes]
rs7764078	1.00[ASN][1000 genomes]
rs7764948	1.00[ASN][1000 genomes]
rs9321130	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321133	1.00[ASN][1000 genomes]
rs9388665	1.00[ASN][1000 genomes]
rs9482916	1.00[CHB][hapmap]
rs9482917	1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482918	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482919	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9482920	1.00[ASN][1000 genomes]
rs9492055	1.00[CHB][hapmap]
rs9492056	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs9492057	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492059	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492060	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492061	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492062	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492063	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492064	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492065	1.00[CHB][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs9492066	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9492067	1.00[ASN][1000 genomes]
rs9492068	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492070	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492071	1.00[ASN][1000 genomes]
rs9492073	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9492074	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129045200-129062000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:129058400-129064000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:129058400-129064000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:129058400-129065800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:129058600-129062200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:129058600-129063800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:129061000-129064000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:129061600-129063200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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