Variant report

Variant	rs9492071
Chromosome Location	chr6:129065281-129065282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1082316	0.99[EUR][1000 genomes]
rs1281243	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs1281244	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs1281247	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs1508448	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949003	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28513684	1.00[ASN][1000 genomes]
rs55986700	1.00[ASN][1000 genomes]
rs6569556	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs72975313	1.00[ASN][1000 genomes]
rs72975384	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72975393	1.00[ASN][1000 genomes]
rs72975394	1.00[ASN][1000 genomes]
rs72975400	1.00[ASN][1000 genomes]
rs72977310	1.00[ASN][1000 genomes]
rs774277	0.99[EUR][1000 genomes]
rs774281	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs774283	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs774289	0.85[EUR][1000 genomes]
rs7746855	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753205	1.00[ASN][1000 genomes]
rs7764078	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764948	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321130	1.00[ASN][1000 genomes]
rs9321131	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9321132	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9321133	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385471	0.97[EUR][1000 genomes]
rs9388665	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482916	0.80[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs9482917	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9482918	1.00[ASN][1000 genomes]
rs9482919	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482920	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492055	0.80[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs9492056	1.00[CHB][hapmap]
rs9492057	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9492059	1.00[ASN][1000 genomes]
rs9492060	1.00[ASN][1000 genomes]
rs9492061	1.00[ASN][1000 genomes]
rs9492062	1.00[ASN][1000 genomes]
rs9492063	1.00[ASN][1000 genomes]
rs9492064	1.00[ASN][1000 genomes]
rs9492065	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9492066	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492067	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492068	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9492069	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9492070	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9492072	0.97[EUR][1000 genomes]
rs9492074	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129058400-129065800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:129063800-129067200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:129064000-129066000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:129064400-129065600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:129064400-129065800	Enhancers	Brain Substantia Nigra	brain
6	chr6:129064400-129066000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:129064400-129089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:129064600-129065600	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:129064600-129066600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:129064600-129067200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:129065000-129065400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:129065000-129065400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:129065000-129065600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:129065000-129065600	Active TSS	Brain Anterior Caudate	brain
15	chr6:129065000-129065800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:129065000-129065800	Enhancers	Brain Germinal Matrix	brain
17	chr6:129065000-129065800	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr6:129065200-129065400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:129065200-129065400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:129065200-129065400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr6:129065200-129065600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:129065200-129065800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:129065200-129068400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:129065200-129068400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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