Variant report

Variant	rs9492073
Chromosome Location	chr6:129066926-129066927
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1281243	1.00[CHB][hapmap]
rs1281244	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs1281247	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs28513684	0.81[EUR][1000 genomes]
rs55986700	0.90[EUR][1000 genomes]
rs6569556	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs72975313	0.86[EUR][1000 genomes]
rs72975384	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72975393	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72975394	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72975400	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72977310	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs774283	1.00[CHB][hapmap]
rs9321130	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9482916	1.00[CHB][hapmap]
rs9482917	1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs9482918	0.85[EUR][1000 genomes]
rs9482919	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs9492055	1.00[CHB][hapmap]
rs9492056	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs9492057	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs9492059	0.86[EUR][1000 genomes]
rs9492060	0.86[EUR][1000 genomes]
rs9492061	0.86[EUR][1000 genomes]
rs9492062	0.86[EUR][1000 genomes]
rs9492063	0.86[EUR][1000 genomes]
rs9492064	0.86[EUR][1000 genomes]
rs9492065	1.00[CHB][hapmap]
rs9492066	1.00[CHB][hapmap]
rs9492068	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs9492069	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9492070	0.88[EUR][1000 genomes]
rs9492074	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129063800-129067200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:129064400-129089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:129064600-129067200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:129065200-129068400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:129065200-129068400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:129065800-129068400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:129065800-129069000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:129066000-129068600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:129066000-129068600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:129066200-129068200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:129066600-129067200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:129066600-129068000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links