Variant report

Variant	rs9493401
Chromosome Location	chr6:132932805-132932806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1081074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28431469	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3813353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61745666	0.95[ASN][1000 genomes]
rs7738600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7741930	0.98[ASN][1000 genomes]
rs7759004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7763027	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7764168	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7769453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9483484	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs9483489	0.89[AMR][1000 genomes]
rs9493400	0.87[ASN][1000 genomes]
rs9493402	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132926200-132933600	Weak transcription	Stomach Mucosa	stomach
2	chr6:132928000-132935200	Enhancers	Fetal Intestine Small	intestine
3	chr6:132929000-132933600	Weak transcription	HepG2	liver
4	chr6:132930400-132934000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:132930400-132935600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:132930800-132936200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:132931000-132934000	Weak transcription	Brain Substantia Nigra	brain
8	chr6:132931600-132937000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:132931800-132933000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:132931800-132933600	Enhancers	Liver	Liver
11	chr6:132932000-132933600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:132932000-132935600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:132932000-132937200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:132932200-132933200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:132932400-132933600	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:132932600-132934800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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