Variant report

Variant	rs9493502
Chromosome Location	chr6:133377784-133377785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6905019	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908340	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6923742	0.80[AMR][1000 genomes]
rs9483522	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483525	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483526	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483527	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493501	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3445931	chr6:133347824-133434532	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133376000-133378000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:133376000-133378000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:133376000-133378400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:133376800-133377800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:133376800-133383200	Weak transcription	Fetal Lung	lung
6	chr6:133377000-133377800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:133377000-133383400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:133377200-133378200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:133377200-133378200	Weak transcription	Right Atrium	heart
10	chr6:133377200-133384000	Weak transcription	Left Ventricle	heart
11	chr6:133377200-133384000	Weak transcription	Psoas Muscle	Psoas
12	chr6:133377400-133377800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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