Variant report

Variant	rs9493599
Chromosome Location	chr6:133663636-133663637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133608130..133609733-chr6:133662657..133665396,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11154720	1.00[ASN][1000 genomes]
rs13194374	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212740	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218103	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218570	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062322	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062356	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17242354	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34018528	1.00[ASN][1000 genomes]
rs34353709	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34395775	1.00[ASN][1000 genomes]
rs34585135	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34804693	1.00[ASN][1000 genomes]
rs34895585	1.00[ASN][1000 genomes]
rs35350600	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35677071	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58707513	1.00[ASN][1000 genomes]
rs6569875	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66480937	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67684955	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923945	1.00[ASN][1000 genomes]
rs6926046	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940715	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs71574647	1.00[ASN][1000 genomes]
rs71574648	1.00[ASN][1000 genomes]
rs71574649	1.00[ASN][1000 genomes]
rs72991903	1.00[ASN][1000 genomes]
rs72991923	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993984	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993996	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747163	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747638	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs9402513	1.00[JPT][hapmap]
rs9483576	0.87[EUR][1000 genomes]
rs9493608	1.00[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9493599	MFSD7	trans	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:133660400-133664000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:133661400-133663800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:133662200-133679200	Weak transcription	Psoas Muscle	Psoas
5	chr6:133662400-133664600	Enhancers	Hela-S3	cervix
6	chr6:133663000-133663800	Enhancers	Gastric	stomach
7	chr6:133663200-133667400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:133663400-133664400	Enhancers	A549	lung
9	chr6:133663400-133666600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links