Variant report

Variant	rs949367
Chromosome Location	chr11:56363256-56363257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10896502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11228656	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11228677	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11228700	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11228715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs11607910	1.00[YRI][hapmap]
rs12363217	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12797276	1.00[YRI][hapmap]
rs12800694	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1509997	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2000932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs35455046	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs35640105	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4939077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs4939082	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56836850	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs998544	0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv468576	chr11:56299930-56420029	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv555099	chr11:56299930-56420029	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv523453	chr11:56324576-56366677	Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
6	nsv525637	chr11:56330546-56366677	Weak transcription Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	nsv1037096	chr11:56332750-56380919	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2760201	chr11:56332762-56368515	Weak transcription Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
9	esv3384407	chr11:56344917-56380827	Weak transcription Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
10	esv3398628	chr11:56344934-56380760	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv982949	chr11:56361311-56395993	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv971952	chr11:56361311-56452186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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