Variant report

Variant	rs949767
Chromosome Location	chr6:133633547-133633548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10485232	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11753937	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11759873	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12523816	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1336521	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17062339	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs296416	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs296418	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs296421	0.81[EUR][1000 genomes]
rs369425	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs377962	0.80[EUR][1000 genomes]
rs385859	0.80[AMR][1000 genomes]
rs72991933	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72991942	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs954917	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886679	chr6:133578733-133635272	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
2	chr6:133623200-133636200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133627600-133637000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:133629400-133639600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:133631000-133635800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:133631200-133639000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:133631600-133635400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:133632800-133633800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:133632800-133634800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:133632800-133634800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:133632800-133635000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:133633000-133634400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:133633000-133636000	Weak transcription	Left Ventricle	heart
14	chr6:133633200-133633600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:133633200-133633600	Enhancers	Psoas Muscle	Psoas
16	chr6:133633200-133633800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:133633400-133633800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr6:133633400-133633800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr6:133633400-133634600	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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