Variant report

Variant	rs9498424
Chromosome Location	chr6:101353138-101353139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11155754	1.00[AMR][1000 genomes]
rs11155755	1.00[AMR][1000 genomes]
rs55808572	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56982295	1.00[AMR][1000 genomes]
rs58051392	1.00[AMR][1000 genomes]
rs60295543	1.00[AMR][1000 genomes]
rs61705233	1.00[AMR][1000 genomes]
rs73508881	1.00[AMR][1000 genomes]
rs73508891	1.00[AMR][1000 genomes]
rs73508894	1.00[AMR][1000 genomes]
rs73508895	1.00[AMR][1000 genomes]
rs73508899	1.00[AMR][1000 genomes]
rs73510835	1.00[AMR][1000 genomes]
rs73510847	1.00[AMR][1000 genomes]
rs73510853	1.00[AMR][1000 genomes]
rs73760730	1.00[AMR][1000 genomes]
rs73760732	1.00[AMR][1000 genomes]
rs73760733	1.00[AMR][1000 genomes]
rs73760735	1.00[AMR][1000 genomes]
rs73760736	1.00[AMR][1000 genomes]
rs73760739	1.00[AMR][1000 genomes]
rs73760740	1.00[AMR][1000 genomes]
rs73760741	1.00[AMR][1000 genomes]
rs73760745	1.00[AMR][1000 genomes]
rs9485426	1.00[AMR][1000 genomes]
rs9485427	1.00[AMR][1000 genomes]
rs9498421	1.00[AMR][1000 genomes]
rs9498422	1.00[AMR][1000 genomes]
rs9498423	1.00[AMR][1000 genomes]
rs9498433	1.00[AMR][1000 genomes]
rs9498434	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1020692	chr6:101136992-101426071	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886457	chr6:101158950-101487473	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv2763587	chr6:101277874-101510491	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv981366	chr6:101350432-101366644	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101352000-101353200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:101352000-101353200	Enhancers	Placenta	Placenta
3	chr6:101352200-101353800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:101352200-101354600	Enhancers	Dnd41	blood
5	chr6:101352400-101353200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:101352800-101353400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:101352800-101354000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:101353000-101353400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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