Variant report

Variant	rs9498703
Chromosome Location	chr6:102233570-102233571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10485276	0.81[ASN][1000 genomes]
rs11156157	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11962789	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1340266	0.81[ASN][1000 genomes]
rs1361444	0.81[ASN][1000 genomes]
rs1408767	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1408768	0.87[ASN][1000 genomes]
rs17062480	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2038842	0.81[ASN][1000 genomes]
rs2039853	0.81[ASN][1000 genomes]
rs2147714	0.81[ASN][1000 genomes]
rs2399636	0.88[ASN][1000 genomes]
rs2518191	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2518206	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2518267	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2518268	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2764218	0.81[ASN][1000 genomes]
rs2764220	0.81[ASN][1000 genomes]
rs2764224	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2764225	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2764228	0.80[ASN][1000 genomes]
rs2764229	0.81[ASN][1000 genomes]
rs4839802	0.91[ASN][1000 genomes]
rs4840195	0.85[ASN][1000 genomes]
rs4840196	0.85[ASN][1000 genomes]
rs4840197	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7749469	0.87[ASN][1000 genomes]
rs7754022	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7775085	0.88[ASN][1000 genomes]
rs7775876	0.86[ASN][1000 genomes]
rs9322609	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9377306	0.86[ASN][1000 genomes]
rs9377307	0.85[ASN][1000 genomes]
rs9377308	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386291	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9386293	0.89[ASN][1000 genomes]
rs9386294	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9390784	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390785	0.91[ASN][1000 genomes]
rs9390788	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9399732	0.84[ASN][1000 genomes]
rs9399733	0.90[ASN][1000 genomes]
rs9404143	0.86[ASN][1000 genomes]
rs9404145	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9404148	0.82[ASN][1000 genomes]
rs9485542	0.91[ASN][1000 genomes]
rs9498693	0.86[ASN][1000 genomes]
rs9498694	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9498695	0.89[ASN][1000 genomes]
rs9498696	0.91[ASN][1000 genomes]
rs9498697	0.91[ASN][1000 genomes]
rs9498698	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9498701	0.89[ASN][1000 genomes]
rs9498702	0.89[ASN][1000 genomes]
rs9498713	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102227600-102236000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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