Variant report

Variant	rs9498713
Chromosome Location	chr6:102251608-102251609
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10485276	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11156157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11962789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1325060	0.90[JPT][hapmap]
rs1340266	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1361444	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1361445	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1361446	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1408767	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1408768	0.81[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs1555775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1556993	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs17062480	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1965603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2038842	0.85[ASN][1000 genomes]
rs2039853	0.85[ASN][1000 genomes]
rs2147714	0.85[ASN][1000 genomes]
rs2246394	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs2399635	0.86[JPT][hapmap]
rs2399636	0.81[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs2518191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2518193	0.81[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2518198	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2518200	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2518201	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2518202	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2518203	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2518206	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2518266	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2518267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2518268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2764218	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2764220	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2764222	0.86[JPT][hapmap]
rs2764224	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2764225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2764226	0.86[JPT][hapmap]
rs2764228	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2764229	0.85[ASN][1000 genomes]
rs2764230	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2764231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2764233	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2764236	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2791812	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2791817	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs2791818	0.86[JPT][hapmap]
rs2791819	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2791821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs2791823	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2791827	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2791832	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2791834	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2791837	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2852573	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs2852574	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2852576	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4501440	0.93[YRI][hapmap]
rs4839802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4839803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs4839804	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4840195	0.81[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4840196	0.81[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4840197	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4840198	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs4840199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs4840200	1.00[YRI][hapmap]
rs6570996	1.00[YRI][hapmap]
rs6922753	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7749469	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7754022	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7775085	0.86[ASN][1000 genomes]
rs7775876	0.84[ASN][1000 genomes]
rs9322609	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322611	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9322613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs9377306	0.81[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs9377307	0.90[ASN][1000 genomes]
rs9377308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9377314	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs9377315	1.00[CEU][hapmap]
rs9377318	1.00[YRI][hapmap]
rs9386291	0.85[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9386293	0.87[ASN][1000 genomes]
rs9386294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390784	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9390785	0.96[ASN][1000 genomes]
rs9390788	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9399728	0.91[JPT][hapmap]
rs9399732	0.81[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9399733	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9404143	0.84[ASN][1000 genomes]
rs9404145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9404148	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9404152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs9404153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs9485542	0.88[ASN][1000 genomes]
rs9498691	0.90[JPT][hapmap]
rs9498693	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9498694	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9498695	0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9498696	0.88[ASN][1000 genomes]
rs9498697	0.88[ASN][1000 genomes]
rs9498698	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9498701	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9498702	0.87[ASN][1000 genomes]
rs9498703	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9498727	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1825149	chr6:102249515-102279200	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv933199	chr6:102249974-102266088	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv933514	chr6:102250150-102266088	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102249000-102253600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:102250600-102251800	Enhancers	NH-A	brain
3	chr6:102251400-102253600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:102251600-102251800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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