Variant report

Variant	rs9498823
Chromosome Location	chr6:102487147-102487148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs9322622	1.00[YRI][hapmap]
rs9485566	1.00[YRI][hapmap]
rs9485578	1.00[YRI][hapmap]
rs9485580	1.00[YRI][hapmap]
rs9485584	1.00[YRI][hapmap]
rs9485590	1.00[YRI][hapmap]
rs9498759	1.00[YRI][hapmap]
rs9498779	1.00[YRI][hapmap]
rs9498790	1.00[YRI][hapmap]
rs9498791	1.00[YRI][hapmap]
rs9498793	1.00[YRI][hapmap]
rs9498802	1.00[YRI][hapmap]
rs9498803	1.00[YRI][hapmap]
rs9498804	1.00[YRI][hapmap]
rs9498813	1.00[YRI][hapmap]
rs9498815	1.00[YRI][hapmap]
rs9498816	1.00[YRI][hapmap]
rs9498822	1.00[YRI][hapmap]
rs9986426	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2756012	chr6:102428797-102489159	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1022069	chr6:102470600-102598244	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv529294	chr6:102474505-103122745	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102486200-102487200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:102486600-102487600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:102486800-102487400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:102486800-102487400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:102487000-102487400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:102487000-102487600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:102487000-102487600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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