Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12058733	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12126550	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12129522	0.86[ASN][1000 genomes]
rs12130258	0.87[ASN][1000 genomes]
rs12406466	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1497679	0.87[ASN][1000 genomes]
rs1497680	0.87[ASN][1000 genomes]
rs2209954	0.86[ASN][1000 genomes]
rs2225250	0.85[ASN][1000 genomes]
rs2317080	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4451557	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4463678	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4571975	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4607887	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5001661	0.87[ASN][1000 genomes]
rs6586447	0.83[ASN][1000 genomes]
rs6667359	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6675138	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6675141	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6692944	0.81[ASN][1000 genomes]
rs7412375	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7521048	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7538302	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs981031	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872072	chr1:104470622-105076810	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010903	chr1:104483363-105468941	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:104799000-104801800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:104799000-104802200	Weak transcription	Fetal Heart	heart
3	chr1:104800600-104801400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:104801200-104802200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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