Variant report

Variant	rs950375
Chromosome Location	chr6:133631031-133631032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1336527	0.88[ASN][1000 genomes]
rs1336528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1799679	0.85[ASN][1000 genomes]
rs1932747	0.97[ASN][1000 genomes]
rs211432	0.87[CHB][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs211433	0.87[CHB][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs211438	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs2765784	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs296415	0.85[ASN][1000 genomes]
rs296419	0.85[ASN][1000 genomes]
rs370735	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs412771	0.81[CHB][hapmap]
rs448167	0.85[ASN][1000 genomes]
rs512268	0.85[ASN][1000 genomes]
rs6924144	0.87[CHB][hapmap];0.90[ASN][1000 genomes]
rs6941879	0.94[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs7764052	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493593	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv886679	chr6:133578733-133635272	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
2	chr6:133623200-133636200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133627000-133633200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:133627400-133633200	Weak transcription	Psoas Muscle	Psoas
5	chr6:133627600-133637000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:133629400-133639600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:133629800-133633000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:133630600-133631200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:133630600-133631600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:133630600-133631600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:133631000-133631400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:133631000-133635800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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