Variant report

Variant	rs9508700
Chromosome Location	chr13:30885161-30885162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30883453..30886159-chr13:30906856..30910683,3	K562	blood:
2	chr13:30878723..30884002-chr13:30884417..30889770,9	K562	blood:
3	chr13:30884908..30886563-chr13:30886759..30889976,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12873373	0.83[EUR][1000 genomes]
rs4769824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6490453	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7335432	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs756850	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs763808	0.96[EUR][1000 genomes]
rs7991052	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9506288	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs9506290	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs9506291	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9506292	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508701	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs9508702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508705	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508706	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508711	0.85[EUR][1000 genomes]
rs9551887	0.93[EUR][1000 genomes]
rs9634361	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9508700	KATNAL1	cis	cerebellum	SCAN
rs9508700	POLR1D	cis	parietal	SCAN
rs9508700	FLT3	cis	parietal	SCAN

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882000-30885200	Weak transcription	Gastric	stomach
2	chr13:30882000-30889000	Weak transcription	Spleen	Spleen
3	chr13:30882200-30885800	Weak transcription	Lung	lung
4	chr13:30882200-30885800	Weak transcription	Thymus	Thymus
5	chr13:30882200-30886000	Weak transcription	Esophagus	oesophagus
6	chr13:30882200-30886600	Weak transcription	HSMMtube	muscle
7	chr13:30882200-30887400	Weak transcription	Primary T cells from cord blood	blood
8	chr13:30882200-30889200	Weak transcription	Left Ventricle	heart
9	chr13:30882200-30889600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:30882200-30892200	Weak transcription	Psoas Muscle	Psoas
11	chr13:30882200-30893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr13:30882200-30896200	Weak transcription	Ovary	ovary
14	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr13:30882400-30885400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:30882400-30885400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr13:30882400-30885800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr13:30882400-30885800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:30882400-30885800	Weak transcription	Fetal Lung	lung
20	chr13:30882400-30886600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr13:30882400-30886600	Weak transcription	HSMM	muscle
22	chr13:30882400-30886800	Weak transcription	Liver	Liver
23	chr13:30882400-30887000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr13:30882400-30887000	Weak transcription	Brain Hippocampus Middle	brain
25	chr13:30882400-30887200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr13:30882400-30887200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr13:30882400-30887400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr13:30882400-30887400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr13:30882400-30887400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr13:30882400-30887600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr13:30882400-30892000	Weak transcription	Fetal Muscle Leg	muscle
32	chr13:30882400-30892200	Weak transcription	Right Atrium	heart
33	chr13:30882400-30894800	Weak transcription	Fetal Intestine Small	intestine
34	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
35	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr13:30882600-30886400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr13:30882600-30886400	Weak transcription	NHEK	skin
38	chr13:30882600-30887000	Weak transcription	Adipose Nuclei	Adipose
39	chr13:30882800-30886000	Weak transcription	HUVEC	blood vessel
40	chr13:30882800-30886600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr13:30882800-30886800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr13:30882800-30887000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr13:30883000-30885400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr13:30883000-30885600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr13:30883000-30885800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr13:30883000-30885800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr13:30883000-30885800	Weak transcription	Fetal Thymus	thymus
48	chr13:30883000-30885800	Weak transcription	HMEC	breast
49	chr13:30883000-30885800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr13:30883000-30886000	Weak transcription	Dnd41	blood

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