Variant report

Variant	rs9516446
Chromosome Location	chr13:87745792-87745793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:87745697..87747842-chr13:87770397..87772892,2	MCF-7	breast:

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10444617	0.95[ASN][1000 genomes]
rs10444618	0.95[ASN][1000 genomes]
rs10444619	0.87[ASN][1000 genomes]
rs12100177	0.95[ASN][1000 genomes]
rs1568547	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568548	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568549	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17614422	0.88[EUR][1000 genomes]
rs17614679	0.95[ASN][1000 genomes]
rs1855480	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2343150	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2880547	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270028	0.83[ASN][1000 genomes]
rs4334135	0.83[ASN][1000 genomes]
rs4340186	0.95[ASN][1000 genomes]
rs4402414	0.83[ASN][1000 genomes]
rs4409956	0.83[ASN][1000 genomes]
rs4418932	0.83[ASN][1000 genomes]
rs4421855	0.83[ASN][1000 genomes]
rs4476033	0.95[ASN][1000 genomes]
rs4540943	0.83[ASN][1000 genomes]
rs4586284	0.95[ASN][1000 genomes]
rs4606575	0.83[ASN][1000 genomes]
rs4616149	0.95[ASN][1000 genomes]
rs4616156	0.95[ASN][1000 genomes]
rs4619267	0.95[ASN][1000 genomes]
rs5019658	0.83[ASN][1000 genomes]
rs55834633	0.95[ASN][1000 genomes]
rs56123603	0.95[ASN][1000 genomes]
rs59946799	0.95[ASN][1000 genomes]
rs61663315	0.95[ASN][1000 genomes]
rs61675857	0.95[ASN][1000 genomes]
rs6650324	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328367	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7328552	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73561091	0.95[ASN][1000 genomes]
rs74103360	0.95[ASN][1000 genomes]
rs74103361	0.95[ASN][1000 genomes]
rs74103362	0.95[ASN][1000 genomes]
rs74103363	0.95[ASN][1000 genomes]
rs74103366	0.95[ASN][1000 genomes]
rs74103368	0.95[ASN][1000 genomes]
rs74103440	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74105916	0.95[ASN][1000 genomes]
rs74105922	0.85[ASN][1000 genomes]
rs74105943	0.95[ASN][1000 genomes]
rs8002837	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs884093	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301944	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9301956	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9301980	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9301982	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301984	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301986	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302046	0.95[ASN][1000 genomes]
rs9516349	0.88[EUR][1000 genomes]
rs9516375	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9516432	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516433	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516435	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516447	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516471	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516472	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516493	0.83[ASN][1000 genomes]
rs9516498	0.95[ASN][1000 genomes]
rs9516501	0.87[ASN][1000 genomes]
rs9516510	0.95[ASN][1000 genomes]
rs9516511	0.95[ASN][1000 genomes]
rs9516514	0.95[ASN][1000 genomes]
rs9516517	0.95[ASN][1000 genomes]
rs9516522	0.95[ASN][1000 genomes]
rs9516523	0.95[ASN][1000 genomes]
rs9516525	0.95[ASN][1000 genomes]
rs9523806	1.00[CEU][hapmap]
rs9524349	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9524507	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524533	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524534	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524535	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524539	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524571	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524572	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524574	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524576	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524579	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524654	0.83[ASN][1000 genomes]
rs9524667	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9524671	0.83[ASN][1000 genomes]
rs9524675	0.83[ASN][1000 genomes]
rs9524680	0.83[ASN][1000 genomes]
rs9524683	0.83[ASN][1000 genomes]
rs9524686	0.83[ASN][1000 genomes]
rs9524688	0.83[ASN][1000 genomes]
rs9524694	0.83[ASN][1000 genomes]
rs9524696	0.83[ASN][1000 genomes]
rs9524701	0.83[ASN][1000 genomes]
rs9524721	0.95[ASN][1000 genomes]
rs9524723	0.95[ASN][1000 genomes]
rs9524724	0.95[ASN][1000 genomes]
rs9524727	0.95[ASN][1000 genomes]
rs9524728	0.95[ASN][1000 genomes]
rs9524729	0.95[ASN][1000 genomes]
rs9524730	0.95[ASN][1000 genomes]
rs9524733	0.95[ASN][1000 genomes]
rs9524734	0.95[ASN][1000 genomes]
rs9524736	0.95[ASN][1000 genomes]
rs9524737	0.95[ASN][1000 genomes]
rs9524749	0.95[ASN][1000 genomes]
rs9524750	0.95[ASN][1000 genomes]
rs9524751	0.95[ASN][1000 genomes]
rs9524752	0.95[ASN][1000 genomes]
rs9524754	0.95[ASN][1000 genomes]
rs9524755	0.95[ASN][1000 genomes]
rs9524756	0.95[ASN][1000 genomes]
rs9524758	0.95[ASN][1000 genomes]
rs9524759	0.87[ASN][1000 genomes]
rs9524781	0.95[ASN][1000 genomes]
rs9524783	0.95[ASN][1000 genomes]
rs9524787	0.95[ASN][1000 genomes]
rs9524793	0.95[ASN][1000 genomes]
rs9524798	0.90[ASN][1000 genomes]
rs9584182	0.88[EUR][1000 genomes]
rs9584183	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428607	chr13:87633567-87766875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87744200-87746000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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