Variant report

Variant	rs952687
Chromosome Location	chr4:148081413-148081414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1835143	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs58585596	0.92[AMR][1000 genomes]
rs73853384	0.88[AMR][1000 genomes]
rs73853385	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148080000-148083600	Weak transcription	Fetal Heart	heart
2	chr4:148080000-148084000	Weak transcription	Fetal Stomach	stomach
3	chr4:148080000-148084400	Weak transcription	Right Atrium	heart
4	chr4:148080200-148082000	Weak transcription	Fetal Kidney	kidney
5	chr4:148080200-148088800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:148080400-148081800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:148080400-148084400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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