Variant report

Variant	rs9528768
Chromosome Location	chr13:65028252-65028253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1336594	0.93[EUR][1000 genomes]
rs1415015	0.94[EUR][1000 genomes]
rs4884577	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884578	0.81[ASN][1000 genomes]
rs7330232	0.84[ASN][1000 genomes]
rs7996319	0.93[EUR][1000 genomes]
rs7998160	0.85[EUR][1000 genomes]
rs8000877	0.84[ASN][1000 genomes]
rs9317429	0.84[ASN][1000 genomes]
rs9528766	0.84[ASN][1000 genomes]
rs9528767	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9540093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9564176	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9598791	0.81[ASN][1000 genomes]
rs9598795	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598796	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430577	chr13:64602899-65034099	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900344	chr13:64868768-65193124	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1050887	chr13:64989770-65058348	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv900346	chr13:64999866-65198145	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv561968	chr13:65006281-65062206	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv428606	chr13:65008453-65158452	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv900347	chr13:65018193-65103190	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65021800-65038800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:65027800-65028400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:65028000-65028400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:65028000-65028400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:65028000-65028400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:65028000-65028400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:65028000-65028400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:65028200-65028400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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