Variant report

Variant	rs9529084
Chromosome Location	chr13:67100984-67100985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10507739	0.89[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11148709	0.80[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs12859352	0.95[ASN][1000 genomes]
rs12866298	0.85[ASN][1000 genomes]
rs12867615	0.97[ASN][1000 genomes]
rs12868791	0.88[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs12868964	0.89[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs12869171	0.92[ASN][1000 genomes]
rs12870336	0.98[ASN][1000 genomes]
rs12877241	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1470370	0.94[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.87[ASN][1000 genomes]
rs17081420	0.97[ASN][1000 genomes]
rs17081458	0.92[ASN][1000 genomes]
rs17081462	0.92[ASN][1000 genomes]
rs17081473	0.92[ASN][1000 genomes]
rs17081495	0.86[ASN][1000 genomes]
rs1932881	0.89[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs1932883	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs1932886	0.89[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs2184841	0.87[ASN][1000 genomes]
rs2324915	0.89[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs2324917	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs34979741	0.92[ASN][1000 genomes]
rs36068454	0.83[ASN][1000 genomes]
rs4144493	0.98[ASN][1000 genomes]
rs4242928	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4379952	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4516088	0.92[ASN][1000 genomes]
rs4883779	0.88[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4883780	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4883781	0.91[GIH][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap]
rs4884677	0.83[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4884678	0.88[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55774405	0.90[ASN][1000 genomes]
rs56729791	0.90[ASN][1000 genomes]
rs61955971	0.92[ASN][1000 genomes]
rs67609817	0.92[ASN][1000 genomes]
rs7327487	0.84[JPT][hapmap]
rs7332539	0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs7335074	0.81[JPT][hapmap]
rs7336189	0.81[JPT][hapmap]
rs7981496	0.87[ASN][1000 genomes]
rs7984453	0.81[JPT][hapmap]
rs7984900	0.88[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs7986003	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7998584	0.86[ASN][1000 genomes]
rs9317591	0.94[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap]
rs9317595	0.88[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9529073	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9529076	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9529077	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9529079	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9529081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9529083	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9529086	0.92[ASN][1000 genomes]
rs9529087	0.89[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs9529092	0.90[ASN][1000 genomes]
rs9529098	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs9540770	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9540772	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs9540776	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9540784	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9540785	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9540786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9540787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9540788	0.93[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs9540789	0.98[ASN][1000 genomes]
rs9540790	0.98[ASN][1000 genomes]
rs9540791	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9540792	0.94[ASN][1000 genomes]
rs9540793	0.94[ASN][1000 genomes]
rs9540794	0.92[ASN][1000 genomes]
rs9540795	0.92[ASN][1000 genomes]
rs9540796	0.89[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs9540799	0.88[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9540800	0.89[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs9540801	0.90[ASN][1000 genomes]
rs9540802	0.90[ASN][1000 genomes]
rs9540803	0.89[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs9540804	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs9540809	0.88[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs9540810	0.90[ASN][1000 genomes]
rs9540812	0.89[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs9540813	0.89[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs9540817	0.93[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs9564317	0.94[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9564319	0.96[CEU][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9564320	0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs9564321	0.88[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9564322	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9571587	0.89[ASN][1000 genomes]
rs9571588	0.94[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap]
rs9571595	0.84[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9571596	0.88[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530416	chr13:66198235-67126195	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1053763	chr13:66210166-67184972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv541811	chr13:66210166-67184972	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv932195	chr13:66215786-67215733	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv530723	chr13:66219650-67200316	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1052017	chr13:66232288-67213033	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv534503	chr13:66287963-67126195	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv915828	chr13:66544825-67212201	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv1041133	chr13:66723731-67530595	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv1051051	chr13:66948744-67126296	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2757538	chr13:67005812-67119200	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2759943	chr13:67005812-67119200	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2422196	chr13:67041890-67295480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv832639	chr13:67049800-67223701	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv900391	chr13:67080274-67133203	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv900392	chr13:67080274-67166073	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv900393	chr13:67080274-67180045	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv900394	chr13:67090292-67180045	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv900395	chr13:67091922-67180045	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1048897	chr13:67093805-67175675	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1044410	chr13:67094314-67148488	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1042195	chr13:67094356-67143770	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv541812	chr13:67094356-67143770	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv1044881	chr13:67095885-67126696	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv900396	chr13:67095885-67166073	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv900397	chr13:67095885-67180045	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv471142	chr13:67098374-67169478	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv455923	chr13:67098375-67150760	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv562098	chr13:67098375-67150760	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv455924	chr13:67098375-67169478	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv455925	chr13:67098375-67169478	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv562099	chr13:67098375-67169478	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv455926	chr13:67098375-67200654	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv562100	chr13:67098375-67200654	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv455927	chr13:67098855-67169478	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv562101	chr13:67098855-67169478	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv1048293	chr13:67099206-67166073	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
38	esv2761797	chr13:67099218-67166073	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67095600-67102600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr13:67095800-67102000	Weak transcription	Brain Substantia Nigra	brain
3	chr13:67099600-67102400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:67099600-67102400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr13:67099600-67102400	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:67099600-67103200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr13:67099600-67103400	Weak transcription	Brain Anterior Caudate	brain
8	chr13:67099800-67102200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:67099800-67102600	Weak transcription	Brain Angular Gyrus	brain
10	chr13:67100600-67101200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr13:67100600-67102600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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