Variant report

Variant	rs9529170
Chromosome Location	chr13:67597314-67597315
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1022866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10492596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10492597	1.00[JPT][hapmap]
rs11148738	1.00[JPT][hapmap]
rs11617670	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1323911	1.00[JPT][hapmap]
rs1323917	1.00[JPT][hapmap]
rs1323923	1.00[JPT][hapmap]
rs1408170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs155009	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs155010	0.84[CEU][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17195266	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17587572	1.00[JPT][hapmap]
rs17791001	1.00[JPT][hapmap]
rs17791056	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1924309	1.00[JPT][hapmap]
rs1924310	1.00[JPT][hapmap]
rs260139	1.00[JPT][hapmap]
rs260140	1.00[JPT][hapmap]
rs260145	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs260160	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs260168	1.00[JPT][hapmap]
rs260169	0.82[AMR][1000 genomes]
rs61959241	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61959242	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7981987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7987190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7987478	1.00[JPT][hapmap]
rs7989912	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9317632	1.00[JPT][hapmap]
rs9317633	1.00[JPT][hapmap]
rs9317637	1.00[JPT][hapmap]
rs9529158	1.00[JPT][hapmap]
rs9529163	1.00[JPT][hapmap]
rs9529166	0.83[ASN][1000 genomes]
rs9529167	0.83[ASN][1000 genomes]
rs9529169	0.83[ASN][1000 genomes]
rs9529174	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9529180	1.00[JPT][hapmap]
rs9529181	1.00[JPT][hapmap]
rs9540949	1.00[JPT][hapmap]
rs9540950	1.00[JPT][hapmap]
rs9540952	1.00[JPT][hapmap]
rs9540953	1.00[JPT][hapmap]
rs9540954	1.00[JPT][hapmap]
rs9540960	1.00[JPT][hapmap]
rs9540967	1.00[JPT][hapmap]
rs9540969	0.83[ASN][1000 genomes]
rs9540970	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9540971	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9540980	1.00[CHB][hapmap]
rs9540983	1.00[JPT][hapmap]
rs9540988	1.00[JPT][hapmap]
rs9540993	1.00[JPT][hapmap]
rs9540995	1.00[JPT][hapmap]
rs9540996	1.00[JPT][hapmap]
rs9571705	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900407	chr13:67434161-67603745	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv832640	chr13:67460304-67635966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv428604	chr13:67480426-67645030	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67595800-67598400	Enhancers	Fetal Thymus	thymus
2	chr13:67596600-67598600	Flanking Active TSS	Dnd41	blood
3	chr13:67596800-67597800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:67596800-67597800	Enhancers	Primary hematopoietic stem cells	blood
5	chr13:67596800-67598400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:67596800-67598400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:67597000-67597400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:67597000-67597400	Enhancers	Brain Hippocampus Middle	brain
9	chr13:67597000-67597600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr13:67597000-67597800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr13:67597000-67597800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr13:67597000-67598200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr13:67597000-67598200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:67597000-67598200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr13:67597000-67598400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr13:67597000-67598400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:67597000-67598400	Enhancers	Primary B cells from cord blood	blood
18	chr13:67597000-67598400	Enhancers	Primary T cells from cord blood	blood
19	chr13:67597000-67598400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr13:67597200-67597400	Enhancers	Thymus	Thymus
21	chr13:67597200-67597800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr13:67597200-67598200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr13:67597200-67598400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr13:67597200-67598400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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