Variant report

Variant	rs9529174
Chromosome Location	chr13:67614480-67614481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1022866	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10492596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492597	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11148737	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148738	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs12184632	0.90[EUR][1000 genomes]
rs12184736	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12372837	0.85[CEU][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1323911	1.00[JPT][hapmap]
rs1323917	1.00[JPT][hapmap]
rs1323923	1.00[JPT][hapmap]
rs1408170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1408171	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149448	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195259	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17517438	0.82[CEU][hapmap]
rs17587572	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17589427	0.82[CEU][hapmap]
rs17791001	1.00[JPT][hapmap]
rs17791056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1924309	1.00[JPT][hapmap]
rs1924310	1.00[JPT][hapmap]
rs260131	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs260139	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs260140	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs260160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs260162	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs260164	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs260165	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs260168	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs56226179	0.90[EUR][1000 genomes]
rs56309321	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56915128	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61191692	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61959247	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61959248	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959249	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959360	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61959362	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61959363	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61959367	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61959407	0.88[EUR][1000 genomes]
rs61961771	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61961774	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7981987	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7987190	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7987478	1.00[JPT][hapmap]
rs9317632	1.00[JPT][hapmap]
rs9317633	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9317637	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs9529158	1.00[JPT][hapmap]
rs9529163	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9529166	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9529167	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9529169	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9529170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9529180	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9529181	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9529182	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9529183	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9529185	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9529186	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9529187	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9529188	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9540949	1.00[JPT][hapmap]
rs9540950	1.00[JPT][hapmap]
rs9540952	1.00[JPT][hapmap]
rs9540953	1.00[JPT][hapmap]
rs9540954	1.00[JPT][hapmap]
rs9540960	1.00[JPT][hapmap]
rs9540964	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9540967	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9540968	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9540969	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9540971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9540980	1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9540982	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9540983	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9540984	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9540987	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9540988	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9540989	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9540993	0.85[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9540994	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9540995	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9540996	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9540997	0.90[EUR][1000 genomes]
rs9540998	0.90[EUR][1000 genomes]
rs9540999	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9541000	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9541001	0.81[EUR][1000 genomes]
rs9541002	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9541003	0.90[EUR][1000 genomes]
rs9541004	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9541006	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9541007	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9541008	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9541013	0.82[CEU][hapmap]
rs9571705	1.00[JPT][hapmap]
rs9645951	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs972419	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832640	chr13:67460304-67635966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv428604	chr13:67480426-67645030	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67612000-67617200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:67612800-67614600	Enhancers	Brain Angular Gyrus	brain
3	chr13:67612800-67616000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr13:67612800-67616600	Enhancers	Brain Anterior Caudate	brain
5	chr13:67612800-67617800	Enhancers	Brain Hippocampus Middle	brain
6	chr13:67613200-67614800	Enhancers	Brain Substantia Nigra	brain
7	chr13:67613200-67616200	Enhancers	Brain Cingulate Gyrus	brain
8	chr13:67613400-67619800	Weak transcription	Fetal Lung	lung

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