Variant report

Variant	rs9535444
Chromosome Location	chr13:50927421-50927422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1149863	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1149864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.99[ASN][1000 genomes]
rs1149869	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1262903	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1269265	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs1269273	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1269275	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.98[ASN][1000 genomes]
rs17074146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1924374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2240810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2532968	0.94[ASN][1000 genomes]
rs59065901	0.82[AFR][1000 genomes]
rs806305	0.87[ASN][1000 genomes]
rs806309	0.88[ASN][1000 genomes]
rs806354	0.82[ASN][1000 genomes]
rs806356	0.83[ASN][1000 genomes]
rs806359	0.81[ASN][1000 genomes]
rs811714	0.87[ASN][1000 genomes]
rs9535442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9562961	0.85[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9568394	0.90[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9568395	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs9568396	0.90[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv983747	chr13:50920787-50927900	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50915000-50928200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:50920800-50928200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr13:50926000-50927600	Enhancers	HepG2	liver
4	chr13:50926000-50928000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:50926000-50929000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr13:50926600-50929400	Enhancers	NHDF-Ad	bronchial
7	chr13:50926600-50933000	Enhancers	Liver	Liver
8	chr13:50926600-50934800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr13:50927000-50928600	Enhancers	HSMM	muscle
10	chr13:50927000-50928600	Enhancers	NH-A	brain
11	chr13:50927200-50927800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:50927200-50928000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:50927200-50928200	Weak transcription	Fetal Kidney	kidney
14	chr13:50927200-50928600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:50927200-50928600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr13:50927200-50928800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:50927200-50928800	Enhancers	NHLF	lung
18	chr13:50927200-50930400	Enhancers	Fetal Thymus	thymus
19	chr13:50927400-50927600	Enhancers	Left Ventricle	heart
20	chr13:50927400-50927600	Enhancers	Psoas Muscle	Psoas
21	chr13:50927400-50927600	Enhancers	Osteobl	bone
22	chr13:50927400-50928200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr13:50927400-50928600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:50927400-50928600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:50927400-50928600	Enhancers	Fetal Muscle Leg	muscle
26	chr13:50927400-50929000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr13:50927400-50929400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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