Variant report

Variant	rs9535641
Chromosome Location	chr13:51889318-51889319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51885872..51888143-chr13:51888698..51890403,2	MCF-7	breast:
2	chr13:51889117..51892002-chr13:51899188..51901236,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1570551	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4566051	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6561632	0.82[EUR][1000 genomes]
rs6561633	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs927607	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs927608	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9526747	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535639	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535647	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs966777	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51853000-51889600	Weak transcription	Brain Angular Gyrus	brain
2	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
3	chr13:51877800-51890000	Weak transcription	Lung	lung
4	chr13:51881600-51889400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr13:51885400-51889400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr13:51885800-51889600	Weak transcription	Brain Hippocampus Middle	brain
7	chr13:51886600-51889400	Weak transcription	Brain Anterior Caudate	brain
8	chr13:51886600-51889400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr13:51886600-51889600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:51886600-51889600	Weak transcription	Brain Substantia Nigra	brain
11	chr13:51886600-51890400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr13:51887600-51889800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:51887800-51890000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:51888200-51890000	Weak transcription	Left Ventricle	heart
15	chr13:51888400-51889400	Weak transcription	Right Atrium	heart
16	chr13:51888800-51889400	Enhancers	Primary hematopoietic stem cells	blood
17	chr13:51888800-51890600	Enhancers	Fetal Muscle Leg	muscle
18	chr13:51888800-51892400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:51889000-51889600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr13:51889000-51889600	Enhancers	Fetal Heart	heart
21	chr13:51889000-51889600	Enhancers	Fetal Lung	lung
22	chr13:51889000-51889800	Enhancers	Fetal Kidney	kidney
23	chr13:51889000-51890000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr13:51889000-51890000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr13:51889000-51890000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr13:51889000-51890000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr13:51889000-51890000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr13:51889000-51890200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr13:51889000-51890200	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr13:51889000-51890200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr13:51889000-51890600	Enhancers	HUVEC	blood vessel
32	chr13:51889000-51892200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr13:51889000-51892600	Enhancers	Osteobl	bone
34	chr13:51889000-51892800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:51889200-51889400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr13:51889200-51889400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr13:51889200-51890000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr13:51889200-51890000	Enhancers	Aorta	Aorta
39	chr13:51889200-51890000	Enhancers	Ovary	ovary
40	chr13:51889200-51890200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr13:51889200-51890200	Enhancers	H9 Cell Line	embryonic stem cell
42	chr13:51889200-51890200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr13:51889200-51890200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr13:51889200-51890200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr13:51889200-51890200	Enhancers	HSMM	muscle
46	chr13:51889200-51892400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr13:51889200-51892600	Enhancers	Muscle Satellite Cultured Cells	--
48	chr13:51889200-51892600	Enhancers	NH-A	brain
49	chr13:51889200-51892600	Enhancers	NHDF-Ad	bronchial

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