Variant report

Variant	rs9540135
Chromosome Location	chr13:65107620-65107621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11148647	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11148648	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1336590	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1544135	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17088301	0.81[EUR][1000 genomes]
rs1953642	0.81[EUR][1000 genomes]
rs2027211	0.81[EUR][1000 genomes]
rs4144235	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4884580	0.83[ASN][1000 genomes]
rs4884581	0.82[EUR][1000 genomes]
rs59045258	0.81[ASN][1000 genomes]
rs7332525	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7338871	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7990152	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7992675	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7996502	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9540134	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9540144	0.81[EUR][1000 genomes]
rs9540145	0.80[EUR][1000 genomes]
rs9540147	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900344	chr13:64868768-65193124	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900346	chr13:64999866-65198145	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428606	chr13:65008453-65158452	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756123	chr13:65057812-65113646	Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900348	chr13:65074137-65193124	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65100400-65108200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:65103200-65108000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:65103800-65107800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:65104200-65107800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:65104200-65108400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr13:65104600-65107800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:65104600-65108200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:65104600-65108200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr13:65107600-65109000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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