Variant report

Variant	rs9540139
Chromosome Location	chr13:65114448-65114449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11148647	0.82[EUR][1000 genomes]
rs11148648	0.81[EUR][1000 genomes]
rs1336591	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17088301	0.86[EUR][1000 genomes]
rs1953642	0.86[EUR][1000 genomes]
rs2027211	0.86[EUR][1000 genomes]
rs4144235	0.86[EUR][1000 genomes]
rs4264269	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4884581	0.87[EUR][1000 genomes]
rs4884582	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61949995	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7332525	0.81[EUR][1000 genomes]
rs7338871	0.81[EUR][1000 genomes]
rs7990152	0.86[EUR][1000 genomes]
rs7991350	0.84[EUR][1000 genomes]
rs7992528	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7996502	0.86[EUR][1000 genomes]
rs9540144	0.86[EUR][1000 genomes]
rs9540145	0.87[EUR][1000 genomes]
rs9540146	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9540147	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900344	chr13:64868768-65193124	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900346	chr13:64999866-65198145	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428606	chr13:65008453-65158452	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv900348	chr13:65074137-65193124	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65113200-65119200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:65114400-65115600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:65114400-65115600	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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