Variant report

Variant	rs9544028
Chromosome Location	chr13:76271131-76271132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1092601	0.86[ASN][1000 genomes]
rs1323712	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1408060	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1535730	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1924214	0.86[ASN][1000 genomes]
rs2025354	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2328953	0.86[ASN][1000 genomes]
rs2328956	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2761398	0.86[ASN][1000 genomes]
rs34545980	0.86[ASN][1000 genomes]
rs480929	0.87[ASN][1000 genomes]
rs4885343	0.86[AMR][1000 genomes]
rs4885345	0.86[ASN][1000 genomes]
rs504273	0.88[ASN][1000 genomes]
rs528783	0.83[ASN][1000 genomes]
rs585233	0.86[ASN][1000 genomes]
rs607095	0.86[ASN][1000 genomes]
rs636580	0.90[ASN][1000 genomes]
rs7336908	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs776527	0.86[ASN][1000 genomes]
rs7986141	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7999158	0.83[AMR][1000 genomes]
rs8002635	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9544029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9544034	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9544035	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9573627	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv900579	chr13:76244056-76307981	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76259400-76273400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:76259600-76294400	Weak transcription	Ovary	ovary
3	chr13:76259800-76274600	Weak transcription	Aorta	Aorta
4	chr13:76259800-76282200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:76260400-76279200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:76261000-76277600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr13:76262400-76278600	Weak transcription	Pancreas	Pancrea
8	chr13:76262600-76272000	Genic enhancers	Osteobl	bone
9	chr13:76266600-76271400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:76268000-76274800	Weak transcription	NHLF	lung
11	chr13:76268000-76279000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:76268400-76271400	Enhancers	Placenta	Placenta
13	chr13:76268600-76271200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:76268600-76271200	Enhancers	Stomach Mucosa	stomach
15	chr13:76268800-76271200	Enhancers	Hela-S3	cervix
16	chr13:76268800-76277800	Weak transcription	NH-A	brain
17	chr13:76269000-76271800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr13:76269400-76271200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr13:76269400-76271800	Weak transcription	NHDF-Ad	bronchial
20	chr13:76269600-76273400	Weak transcription	Fetal Intestine Small	intestine
21	chr13:76270400-76275200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr13:76270600-76271200	Enhancers	HSMMtube	muscle
23	chr13:76270800-76271200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr13:76270800-76271400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:76270800-76271400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr13:76271000-76271400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr13:76271000-76272200	Strong transcription	HSMM	muscle
28	chr13:76271000-76272600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:76271000-76273400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr13:76271000-76273600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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