Variant report

Variant	rs9544035
Chromosome Location	chr13:76293789-76293790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1092601	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1323710	0.83[EUR][1000 genomes]
rs1323712	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1408060	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1535730	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1830760	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1924214	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2025354	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2328953	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2328954	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2328956	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2761398	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34545980	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs479824	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs480929	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4885345	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs502171	0.91[EUR][1000 genomes]
rs504273	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs508596	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs528783	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs560069	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs562940	0.83[EUR][1000 genomes]
rs585233	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs603274	0.81[EUR][1000 genomes]
rs607095	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs626182	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs634729	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs636505	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs636580	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7336908	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs776527	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7986141	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8002635	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9530463	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9544028	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9544029	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9544034	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565195	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9573627	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9573636	0.85[AMR][1000 genomes]
rs9573647	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv900579	chr13:76244056-76307981	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1091	chr13:76282392-76327906	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76259600-76294400	Weak transcription	Ovary	ovary
2	chr13:76279400-76308000	Weak transcription	Left Ventricle	heart
3	chr13:76283600-76308000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:76288200-76297800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:76289200-76294600	Weak transcription	Stomach Mucosa	stomach
6	chr13:76290600-76293800	Weak transcription	HSMMtube	muscle
7	chr13:76290600-76298000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr13:76290600-76298200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:76290600-76298200	Weak transcription	Aorta	Aorta
10	chr13:76290600-76298400	Weak transcription	Fetal Lung	lung
11	chr13:76290800-76299000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:76291600-76298000	Strong transcription	HSMM	muscle
13	chr13:76291800-76297200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr13:76292000-76294400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:76292400-76294800	Strong transcription	NH-A	brain
16	chr13:76292400-76297200	Strong transcription	Osteobl	bone
17	chr13:76292600-76293800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:76292600-76297000	Weak transcription	Hela-S3	cervix
19	chr13:76292800-76294800	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr13:76292800-76297800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:76293400-76295000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:76293600-76294400	Strong transcription	NHLF	lung
23	chr13:76293600-76294600	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links